Table of Contents for X-Ray Crystallography Applications

See the Special Section on Data Collection Information.

ARP:Automated Refinement Procedure

CCP4 Program Suite : Structure Refinement
CNS : Crystallography and NMR System (Local Only)
Coot : Model Building, Model Completion, and Validation
CRITXPL: Plotting of R and Rfree, Etot, BOND, ANGL, DIHE, VDW, NOE, etc.

DEJAVU: Searching for secondary structure elements
DEMON/ANGEL: Density Modification and Averaging
DENZO : Diffraction Data Reduction
DPS_GUI: Process Quantum-4 CCD Detector Data

GVX: Greg Van Duyne's Programs

d*TREK: Diffraction Data Reduction

HEAVY: Heavy Atom Search and Refinement
HKL2000 : Graphical user interface for the HKL data processing suite.

MADSYS : Multi-wavelength Anomalous Diffraction Refinement
MAIN : Model Building and Refinement vs Maps
MAXSCALE : Scaling Fhkl's
MOLEMAN2: Manipulation and analysis of PDB files
Moloc: manipulation, visualization, and evaluation of molecular structures

Nuclin-Nuclsq: A rapid and automatic online refinement tool of partial or full assemblies of nucleic acids

O : Model Building and Refinement vs Maps
Ortep-III: Crystal structure illustration

PATTERN: Display Diffraction Pattern
pdb_extract: Conversion of PDB and reflection data into mmCIF Format
PDB Validation Suite: Validation of 3D structure data
Phaser : Maximum likelihood Phasing
PHASES : Computing Phase Angles
PHENIX : Automated crystal structure determination
PROFILE : Eisenberg 3D Environment Analysis

Queen of Spades (Qs) -- Molecular Replacement
RAVE : Density Averaging
Replace: Rotational and translational searches of unit cells
Resolve:Maximum-likelihood density modification

SgInfo - Space group information
SHARP: Statistical Heavy- Atom Refinement and Phasing
SHELX : Structure Refinement
SnB: Normalize and visualize x-ray crystal structures
SOLVE: Crystallographic structure solution for MIR and MAD

TNT: Refinement by Least Squares Function-minimization
TurboFrodo : Model Building and Refinement vs Maps

Uppsala Software Factory: Gerard Kleywegt's Programs

Westhof Programs:RNA refinement and modeling package.
WHAT_IF : Model Building and Refinement vs Maps

xdlDATAMAN and xdlMAPMAN
XDS : X-ray Detector Software for processing troublesome diffraction data
XDS (Antique version): Data Streamer for the obsolete Xentronics Area Detector
Xplor : Structure Refinement
Xrayiew : Teaching Tool for Diffraction, Reciprocal Space, von Laue, Ewald, etc.
Xtalview : Model Building and Refinement vs Maps