Molecular Biophysics & Biochemistry 447b3 / 747b3 Bioinformatics

Surface Analysis of Macromolecules

Geometric Analysis of Molecues

How are commonly used VDW radii calculated?

What are comon VDW radii values?

Type of Defined Surfaces

Calculation of Atomic Packing in Proteins

Buried Hydrophobic Surface upon Protein Folding

Interfacial Buried Surface

Occluded Surface

Occluded Surface Model Evaluation

Occluded Surface Packing Analysis

Protein/Protein Interaction Analysis in Membranes

Locating Binding Site Surfaces

Docking Ligands