DALI: The Dali server is a network service for comparing protein structures in 3D. You send in your coordinates and recieve by email an ASCII file with the following type of multiple structural alignment information:
## SUMMARY: PDB/chain identifiers and structural alignment statistics NR. STRID1 STRID2 Z RMSD LALI LSEQ2 %IDE REVERS PERMUT NFRAG TOPO PROTEIN 6: 9848 1ytb-A 19.9 1.9 176 180 39 0 0 6 S Tata-box binding protein (ytbp) complexed with DNA cont 7: 9848 1cdw-A 19.9 1.9 176 179 38 0 0 6 S tata-box-binding protein fragment 16 base-pair tata-con 15: 9848 1crk-A 4.0 5.0 130 380 12 0 0 19 S creatine kinase biological_unit 16: 9848 3pmg-A 3.7 3.1 76 561 8 0 0 11 S alpha-d-glucose-1,6-bisphosphate (phosphoglucomutase) 17: 9848 1gal 3.6 3.3 79 581 8 0 0 12 S Glucose oxidase 18: 9848 1mml 3.5 3.1 73 251 23 0 0 9 S mmlv reverse transcriptase
And this is followed by a detailed breakdown of the alignments and scores for each of the aligned structures.
Back to Post-structure Analysis
Revised: Tuesday, 20-Oct-1998 14:49:10 EDT