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Protein, DNA and Diffraction Databases and Servers

Anomolous Scattering Factors and Absorption Coefficients

Local copy of Sasaki's tables

Atlas of Side-Chain and Main-Chain Hydrogen Bonding

A record of the hydrogen bonding patterns of the standard hydrogen bonding groups

Biology Workbench

Point and click web interface that provides access to databases and analysis tools

Cambridge Structural Data Base

Small Molecules


Protein Structure Classification

CE (Combinatorial Extension)

Aligns two polypeptide chains using characteristics of their local geometry

Cis-Prolines, Cis-Peptides and Disulfides

Lists thereof

DALI Server

Comparing protein structures in 3D

DSMP Database

Database of Structural Motifs in Proteins

DSSP Program and Database

Secondary Structure Assignments


Protein, Nucleotide Databases and MEDLINE subset


Fold classification based on Structure-Structure alignment of Proteins

Macromolecular Assemblies

Protein Quaternary Structure Database (from the EBI-MSD)


Relational Database


Hetero-Compounds - Uppsala (PDB, VRML files; X-PLOR, TNT, O Dictionaries)

National Library of Medicine

PubMed and other Online Information Services


National Center for Biotechnology Information (GenBank, BLAST, Entrez, etc.)

Nucleic Acid Database (NBD)

Repository for the coordinates of nucleic acid-containing crystal structure (Rutgers Univ.)

Local OWL or WWW OWL

Composite Protein Sequence Database

Protein Data Bank (PDB)

X-ray, NMR and Model Structures (Now the RCSB)

Protein Information Resource (PIR)

Comprehensive, annotated, and non-redundant protein sequence database

Protein-Protein Interfaces

All interfaces with >9 residues interacting. (JMB paper describing this database)


Protein Structure Prediction Server


Citation Searching

Research Collaboratory for Structural Bioinformatics (RCSB)

X-ray, NMR and Model Structures (Now the PDB)

Research Computing Group (Yale School of Medicine)

Links to Many Databases and Analysis Tools


A comprehensive Collection of ANSI C Routines for the Handling of Space Group Symmetry

Structural Classification of Proteins (SCOP)

Families, Superfamilies and Folds


Highly Annotated Protein Sequence Databases


NCBI's structure-structure similarity search

Yale Library Research Work Station

Databases and Electronic Journals, etc.

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Center for Structural Biology (www.csb.yale.edu), Yale University (www.yale.edu)
Contact: webadmin(at)mail^csb^yale^edu
Last Modified: Thursday, 15-Aug-2002 16:58:28 EDT by P. Fleming