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Contents
ARP/wARP 5.1
User Guide
December 1999
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Contents
General
Introduction
Major changes in version 5.1
Latest News and Bug Report
Distribution
Acknowledgments
Installing ARP/wARP
Using ARP/wARP
Applications
Which application should I use?
Quality of the X-ray Data
Limitations
Automated Scripts
Preparing for ARP/wARP
Killing Jobs
Setting Things Up With arp_warp_setup.sh
Running ARP/wARP : The arp_warp.sh script.
mode warpNtrace
: running ARP/wARP for autobuilding
mode molrep
: using Molecular Replacement solutions
mode warp
: phase extension, modification and averaging
mode solvent n
: Solvent Building
Handling side chains,
side_dock.sh
Ab initio
solution of metalloproteins,
warp_solve.sh
ARP/wARP Output Files
ARP/wARP and SHELXL for solvent building
Supplementary Use of ARP/wARP
I Hate Automated Scripts
ARP/wARP Keywords
Short Introduction
Examples
The Keywords
The SIDE_TRACE keywords
You Want More?
Viewing ARP/wARP Log Files
Checking Convergence
Crashing Scripts
Author-Abuse Information
This Document...
References
Bibliography
About this document ...
Richard J. Morris
1999-12-22
ARP/wARP 5.1