Contents

• Contents
• General
  • Introduction
  • Major changes in version 5.1
  • Latest News and Bug Report
  • Distribution
  • Acknowledgments
• Installing ARP/wARP 
• Using ARP/wARP 
  • Applications
  • Limitations
  • Automated Scripts
  • Preparing for ARP/wARP 
  • Killing Jobs
  • Setting Things Up With arp_warp_setup.sh
  • Running ARP/wARP : The arp_warp.sh script.
  • Handling side chains, side_dock.sh
  • Ab initio solution of metalloproteins, warp_solve.sh
  • ARP/wARP Output Files
  • ARP/wARP and SHELXL for solvent building
  • Supplementary Use of ARP/wARP 
  • I Hate Automated Scripts
• ARP/wARP Keywords
  • Short Introduction
  • Examples
  • The Keywords
  • The SIDE_TRACE keywords
  • You Want More?
  • Viewing ARP/wARP Log Files
  • Checking Convergence
  • Crashing Scripts
• Author-Abuse Information
• This Document...
• References
• Bibliography