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This example uses a DNA double helix of 12 base pairs.
cp /srv/local/mdtc1.0/example/single/* .
source curves.com
axis.out
which should look like this:
Base Pair: C 1- G 24
Axis-Base Pair Parameters
Config # XDP YDP INC TIP
1 -0.61 0.18 5.31 0.73
2 -0.61 0.18 5.31 0.73
... etc
where XDP = x displacement, YDP = y displacement, INC = inclination, and TIP = tip as defined.
backbone.out
which should look like this:
Base: C 1
Conformational Angles L.H.S
Config # d e z a b g c f
1 156.59 218.62 216.44 294.34 169.89 40.26 254.80 161.67 56.56
2 156.59 218.62 216.44 294.34 169.89 40.26 254.80 161.67 56.56
... etc
where d, e, z, a, b, g, c, and f refer to delta, epsilon, zeta, alpha, beta, gamma, chi, and phi angles.
base .out
Base Pair: C 1- G 24
Intra-Base Pair Parameters
Config # SHR STR STG BKL PRP OPN
1 -0.98 -0.19 -0.14 3.68 -16.29 -4.94
2 -0.98 -0.19 -0.14 3.68 -16.29 -4.94
... etc
where SHR = shear, STR = stretch, STG = stagger, BKL = buckle, PRP = propeller, and OPN= open as defined.
and you have six postscript output files. There is only one line in these dials and windows to indicate that only one structure is analyzed.
If you give the command:
source plate.com
you will have Postscript files called page*.ps that look like this:
If you give the command:
source moldraw.com
you will have Postscript files called page*.ps that look like this:
Last Modified: Tuesday, 12-Oct-1999 11:14:39 EDT