SELECTED OUTPUT TABLES RAP1 C-G-C-A-C-A-C-C-C-A-C-A-C-A-C-C-A-G B10A_PDT035 (Test Run 1 June 98) Table 1. Base step parameters VALL VTIL VROL VSLI VTWI VRIS VSLP Tilt Roll Slide Twist Rise Cup 1 2 0.84 0.62 -0.57 1.14 35.47 3.73 -0.47 0.65 -0.54 1.10 37.06 3.66 -12.51 2 3 3.47 1.51 -3.12 0.91 44.49 3.23 0.66 1.49 -3.13 0.86 42.98 3.22 3.72 3 4 2.76 -0.79 2.65 -0.09 32.42 3.35 -0.29 -0.89 2.61 -0.09 34.56 3.59 -5.73 4 5 3.09 0.15 -3.09 -0.73 29.01 3.48 0.48 0.07 -3.08 -0.76 27.42 3.48 -2.61 5 6 1.59 1.57 -0.25 -1.08 41.30 3.20 0.14 1.57 -0.25 -1.05 41.47 3.09 10.82 6 7 5.85 -0.96 -5.78 -0.75 35.63 3.54 0.89 -0.89 -5.79 -0.75 34.44 3.27 -7.40 7 8 5.62 -1.73 5.34 -1.58 23.54 2.96 -1.29 -1.51 5.42 -1.51 24.19 3.02 15.05 8 9 3.96 1.41 3.71 0.18 24.02 3.73 -0.40 1.30 3.74 0.27 24.50 4.05 -17.98 9 10 6.50 -1.14 6.39 1.01 39.26 3.20 -0.71 -1.30 6.32 1.12 40.39 3.37 10.57 10 11 9.72 2.43 -9.42 0.09 36.30 3.46 1.36 2.06 -9.53 0.00 35.06 2.81 -1.28 11 12 4.12 -0.42 4.10 1.17 37.58 3.72 -1.10 -0.63 4.04 1.21 38.02 3.66 -10.77 12 13 2.77 0.16 2.77 -0.61 29.43 3.19 0.59 -0.02 2.75 -0.58 29.02 3.24 5.88 13 14 5.21 3.11 4.18 -1.15 36.72 3.05 1.00 3.02 4.25 -1.11 36.87 3.02 15.90 14 15 3.09 1.81 2.50 -0.41 25.34 3.77 -0.62 1.75 2.54 -0.39 25.89 3.88 -18.74 15 16 2.84 0.33 2.82 -0.31 34.44 3.25 0.14 0.57 2.78 -0.24 34.10 3.30 4.59 16 17 4.43 0.26 4.42 0.54 35.19 3.56 -0.16 0.09 4.43 0.65 36.21 3.65 -3.77 17 18 1.59 -1.59 0.09 0.29 34.70 3.53 0.43 -1.59 0.03 0.30 35.16 3.60 -7.67 5 10 15 C-G-C-A-C-A-C-C-C-A-C-A-C-A-C-C-A-G B10A_PDT035 (Test Run 1 June 98) R:-0-1 1-1-0-2 2 1 2-3 1 1 1 1 1 1 0 S: 4 3-0-2-4-3-6 0 4 0 4-2-4-1-1 2 1 T: 0 3-1-2 2 0-4-4 1 0 1-2 0-3-0 0-0 1 SELECTED OUTPUT TABLES RAP1 C-G-C-A-C-A-C-C-C-A-C-A-C-A-C-C-A-G B10A_PDT035 (Test Run 1 June 98) Table 2. Base pair parameters Cos(X) Cos(Y) Cos(Z) Tip Incl Prop Buck X Dsp Y Dsp 1 -0.104 0.023 0.994 -4.29 -4.34 -6.59 8.16 2.61 -5.10 2 -0.102 0.009 0.995 -1.69 -5.60 -4.78 -4.35 -1.03 -4.06 3 -0.075 -0.045 0.996 -0.72 -4.96 -3.06 -0.63 -2.58 -1.28 4 -0.114 -0.018 0.993 4.82 -4.57 -6.80 -6.36 -2.96 0.57 5 -0.063 -0.034 0.997 3.41 -2.31 -2.61 -8.97 -1.74 1.23 6 -0.066 -0.007 0.998 3.30 1.89 -5.23 1.86 -0.54 0.94 7 0.007 0.064 0.998 -3.63 0.78 -9.04 -5.54 0.67 -0.03 8 0.026 -0.032 0.999 1.95 -1.34 -2.61 9.51 -1.03 -1.53 9 0.021 -0.101 0.995 5.66 1.70 -3.05 -8.48 -1.65 -0.77 10 0.118 -0.158 0.980 9.71 5.89 -19.62 2.10 -1.73 1.32 11 -0.049 -0.190 0.981 -5.43 9.89 2.25 0.81 0.68 1.14 12 0.007 -0.146 0.989 -6.35 5.46 -10.98 -9.96 0.04 1.63 13 0.024 -0.101 0.995 -5.51 2.20 -10.16 -4.07 0.86 0.55 14 0.065 -0.020 0.998 -2.75 2.74 -7.58 11.83 1.37 -1.51 15 0.060 0.034 0.998 -1.63 3.61 -5.58 -6.91 -0.29 -2.38 16 0.015 0.055 0.998 -0.79 3.20 -9.13 -2.33 -1.67 -2.28 17 -0.060 0.039 0.997 1.63 3.75 -13.23 -6.09 -2.70 -0.52 18 -0.039 0.020 0.999 -0.24 2.52 -15.88 -13.77 -2.05 1.06 1 SELECTED OUTPUT TABLES RAP1 C-G-C-A-C-A-C-C-C-A-C-A-C-A-C-C-A-G B10A_PDT035 (Test Run 1 June 98) Table 3. Angles between all normal vector pairs J= 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 I= 1 0 0 4 2 4 2 6 8 10 16 12 11 10 9 9 7 2 3 I= 2 0 0 3 1 3 2 7 7 9 15 11 10 9 9 9 7 2 3 I= 3 4 3 0 2 0 2 7 5 6 12 8 7 6 8 8 7 4 4 I= 4 2 1 2 0 3 2 8 8 9 15 10 10 9 10 10 8 4 4 I= 5 4 3 0 3 0 1 6 5 6 12 9 7 6 7 8 6 4 3 I= 6 2 2 2 2 1 0 5 5 7 13 10 9 7 7 7 5 2 2 I= 7 6 7 7 8 6 5 0 5 9 14 14 12 9 5 3 0 4 3 I= 8 8 7 5 8 5 5 5 0 3 9 10 6 3 2 4 5 6 4 I= 9 10 9 6 9 6 7 9 3 0 6 6 2 0 5 8 8 9 7 I= 10 16 15 12 15 12 13 14 9 6 0 9 6 6 8 11 13 15 13 I= 11 12 11 8 10 9 10 14 10 6 9 0 4 6 11 14 14 13 12 I= 12 11 10 7 10 7 9 12 6 2 6 4 0 2 7 10 11 11 9 I= 13 10 9 6 9 6 7 9 3 0 6 6 2 0 5 8 8 9 7 I= 14 9 9 8 10 7 7 5 2 5 8 11 7 5 0 3 5 7 6 I= 15 9 9 8 10 8 7 3 4 8 11 14 10 8 3 0 2 6 5 I= 16 7 7 7 8 6 5 0 5 8 13 14 11 8 5 2 0 4 3 I= 17 2 2 4 4 4 2 4 6 9 15 13 11 9 7 6 4 0 1 I= 18 3 3 4 4 3 2 3 4 7 13 12 9 7 6 5 3 1 0