VERIFY_3D reads the output file of the program ENVIRONMENTS and a
3D-1D scoring table. It creates a profile and plots the average
3D-1D score within a window as a function of sequence position.
The plot is written to the output file. The GCG version of
VERIFY_3D makes a plot using the GCG graphics libraries.
It will ask for the following:
1) The ENVIRONMENTS output file
2) A file containing the 3D-1D scoring table
3) A file name for the output plot data.
The output file lists first the 3D-1D score and the sum at each
position. Then the average 3D-1D score within the chosen
window at each position.
4) A window size for the average 3D-1D score.