SnB References
Copyright © International Union of Crystallography (Acta Cryst.
A & D, J. Appl. Cryst.)
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A. The minimal function
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Debaerdemaeker, T. & Woolfson, M.M. (1983). On the application of
phase relationships to complex structures XXII. Techniques for random
phase refinement, Acta Cryst. A39, 193-196.
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Hauptman, H.A. (1991). A minimal principle in the phase problem. In Crystallographic
Computing 5: from Chemistry to Biology, edited by D.Moras,
A.D. Podjarny & J.C. Thierry, 324-332. Oxford: IUCr & Oxford
University Press.
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DeTitta, G.T., Weeks, C.M., Thuman, P., Miller, R. & Hauptman, H.A.
(1994). Structure solution by minimal function phase refinement and
Fourier filtering: theoretical basis, Acta Cryst. A50,
203-210.
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B. The Shake-and-Bake (dual-space) phasing method
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Weeks, C.M., DeTitta, G.T., Miller, R. & Hauptman, H.A. (1993).
Applications of the minimal principle to peptide structures, Acta
Cryst. D49, 179-181.
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Weeks, C.M., DeTitta, G.T., Hauptman, H.A., Thuman, P. & Miller, R.
(1994). Structure solution by minimal function phase refinement and
Fourier filtering: II. implementation and applications, Acta
Cryst. A50, 210-220.
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Weeks, C.M., Sheldrick, G.M., Miller, R., Uson, I. & Hauptman, H.A.
(1999). Ab initio phasing by dual-space direct methods, Bulletin
of the Czech & Slovak Cryst. Assn. in press.
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C. SnB program
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Version 1.5: Miller, R., Gallo, S.M., Khalak, H.G. &
Weeks, C.M. (1994). SnB: crystal structure determination
via Shake-and-Bake, J. Appl. Cryst. 27,
613-621.
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Version 2.0: Weeks, C.M. & Miller, R. (1999). The
design and implementation of SnB v2.0, J. Appl.
Cryst. 32, 120-124.
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D. Significant Shake-and-Bake applications
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First unknown: Miller, R., DeTitta, G.T., Jones, R.,
Langs, D.A., Weeks, C.M. & Hauptman, H.A. (1993). On the
application of the minimal principle to solve unknown structures, Science
259, 1430-1433.
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First large molecule: Weeks, C.M., Hauptman, H.A.,
Smith, G.D., Blessing, R.H., Teeter, M.M. & Miller, R. (1995).
Crambin: A direct solution for a 400 atom structure, Acta
Cryst. D51, 33-38.
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First substructure: Smith, G.D., Nagar, B., Rini, J.M.,
Hauptman, H.A. & Blessing, R.H. (1998). The use of SnB
to determine an anomalous scattering substructure, Acta
Cryst. D54, 799-804.
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First unknown substructure: Turner, M.A., Yuan, C.-S.,
Borchardt, R.T., Hershfield, M.S., Smith, G.D. & Howell, P.L.
(1998). Structure determination of selenomethionyl
S-adenosylhomocysteine hydrolase using data at a single wavelength, Nature
Structural Biology 5, 369-376.
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E. SnB parameters
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Chang, C.-S., Weeks, C.M., Miller, R. & Hauptman, H.A. (1997).
Incorporating tangent refinement in the Shake-and-Bake
formalism, Acta Cryst. A53, 436-444.
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Weeks, C. M. & Miller, R. (1999). Optimizing Shake-and-Bake
for proteins, Acta Cryst. D55, 492-500.
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Howell, P.L., Blessing, R.H., Smith, G.D. & Weeks, C.M. (2000).
Optimum DREAR and SnB parameters for determining
selenium atom substructures, Acta Cryst. D56,
604-617.
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F. SnB usage
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Xu, H., Weeks, C.M., Deacon, A.M., Miller, R. & Hauptman, H.A.
(2000). Ill-conditioned Shake-and-Bake: The trap of the
false minimum, Acta Cryst. A56, 112-118.
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G. Normalization & the DREAR suite
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Blessing, R.H., Guo, D.Y. & Langs, D.A. (1998). Intensity
statistics and normalization. In Direct methods for solving
macromolecular structures, edited by S. Fortier, pp 47-71.
Dordrecht: Kluwer Academic Publishers.
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Blessing, R.H. & Smith, G.D. (1999). Difference structure factor
normalization for heavy-atom or anomalous-scattering substructure
determinations, J. Appl. Cryst. 32, 664-670.