Uppsala Software News @ 19990503 ******************************** http://xray.bmc.uu.se/usf/ **************************** ftp://xray.bmc.uu.se/pub/gerard/ ********************************** * MAPMAN Version 5.7 ******** - A set of NEw commands has been implemented (similar to those in MAMA), that can be used to create empty maps that can subsequently be filled from other maps etc. (e.g., to augment input maps for ESSENS; see new section in the ESSENS manual on how to do this !) - Changed maximum number of maps allowed to 100. * DEJAVU Version 5.3.1 ******** - Increased maximum number of proteins to 2700. - New library (up-to-date until December, 1998), with 2,586 proteins ( ftp://xray.bmc.uu.se/pub/gerard/dejavu/dejavu_dec98.lib.Z ). * SPASM & RIGOR *************** - New SPASM database (up-to-date to December, 1998), with 2,591 proteins ( ftp://xray.bmc.uu.se/pub/gerard/spasm/spasm_dec98.lib.Z ). - New RIGOR database (up-to-date to December, 1998), with 5,394 motifs (2,247 of which are so-called "engineerable" motifs) ( ftp://xray.bmc.uu.se/pub/gerard/spasm/rigor_dec98.lib.Z ). * DATAMAN Version 5.7.2 ********* - Minor bug fixed. * MAMA Version 5.6.1 ****** - Changed maximum number of masks allowed to 100. * VOIDOO Version 3.1.4 ******** - Increased maximum number of atoms to 100000. * OMAC ****** - hetero.pdb - an updated version of the hetero compound collection, now containing almost 2000 entries ! ( ftp://xray.bmc.uu.se/pub/gerard/omac/hetero.pdb ) - all_on_off.odb - a tad nerdy, perhaps, but the new version of the object-on/off-switching macros no longer allowed one to toggle the display status of the objects. I added a macro to do this in only 4 lines of O commands :-) - cis_proline.odb - fixed so it works with O 6.2.2 again * HIC-Up ******** - HIC-Up (http://xray.bmc.uu.se/hicup) has been updated and now contains information for 1,981 hetero entities encountered in the PDB. - HIC-Up has a new, easily remembered URL: http://welcome.to/hicup * DOMBO ******* - Dombo has a new, easily remembered URL: http://zap.to/dombo - The latest (April) issue of Dombo (Vol. 8, Nr. 2) is available ! (Includes contributions from two "foreign" O-info subscribers !) --cd CD's Words of the Month: ENATATION: escape by swimming ("e. is when your crystal floats out of your capillary while you're not watching") ENCHIRIDION: manual ("who took my "O"-e. ?") ENDOGAMOUS: pertaining to marriage within one's group ("we have at least ten e. scientists in our lab") ENERGUMEN: fanatic ("that e. worked on his averaging until 5 a.m.") ENIGMATOLOGY: science of solving enigmas ("before using Unix, first take a course in e.") ENSYNOPTICITY: ability of taking a general view of something ("if you can twist the zoom dial in "O", you have e.") ENTHEOMANIA: abnormal state in which one thinks one is inspired ("whenever I feel e. coming up, I go home and get some sleep") EOPROLIGERY: ability to reproduce early ("e. is when you manage to consistently get one crystal form if you set up your drops before 6 a.m.") EPEXEGETIC: pertaining to further explanation ("you have to be a bit more e. when you write about the structure-function relations") EPHEMEROMORPH: low form of life which defies animal or vegetable classification ("the student got depressed when his supervisor called him an e.") EPICARICACY: taking pleasure in others' misfortune ("many scientists suffer from severe e.") EPIDEICTIC: impressive; for display purposes ("our ESVs are mainly e.") EPILEGOMENON: added remark ("that snob calls a note-added-in-proof an e.") ERGASIOPHOBIA: fear of or aversion to work ("there's no place for e. in our lab") ERGOPHILE: someone who loves work ("there's no place for e. in their lab")