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The following example performs overall B-factor refinement, followed by restrained individual B-factor refinement:


The B-factors can be plotted as a function of residue number by first running the following X-PLOR protocol, which produces a text file ``bfactorplot.list":


In the second step, a Mathematica script file can be used to produce the B-factor plots shown in Fig. 13.2 for both backbone and side-chain atoms:


Figure 13.2: B-factor vs. residue number.  

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