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Berendsen, H.J.C., Postma, J.P.M., van Gunsteren, N.F., DiNola, A., and Haak, J.R. (1984). ``Molecular dynamics with coupling to an external bath", J. Chem. Phys. 81, 3684--3690.

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Brünger, A.T. (1988). ``Crystallographic Refinement by Simulated Annealing: Application to a 2.8 Å Resolution Structure of Aspartate Aminotransferase", J. Mol. Biol. 203, 803--816.

Brünger, A.T. (1989). ``A Memory-Efficient Fast Fourier Transformation Algorithm for Crystallographic Refinement on Supercomputers", Acta Cryst. A45, 42--50.

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Brünger, A.T. (1993). ``Assessment of Phase Accuracy by Cross Validation: The Free R Value. Methods and Applications", Acta Cryst. D, in press.

Brünger, A.T., Brooks, C.L., and Karplus, M. (1984). ``Stochastic Boundary-Conditions for Molecular-Dynamics Simulations of ST2 Water", Chem. Phys. Lett. 105, 495--500.

Brünger, A.T., Clore, G.M., Gronenborn, A.M., and Karplus, M. (1986). ``Three-dimensional structures of proteins determined by molecular dynamics with interproton distance restraints: Application to crambin", Proc. Natl. Acad. Sci. USA 83, 3801--3805.

Brünger, A.T., Clore, G.M., Gronenborn, A.M., and Karplus, M. (1987). ``Solution conformations of a human growth hormone releasing factor: comparison of the restrained molecular dynamics and distance geometry methods for a system without long-range distance data", Protein Engineering 1, 399--406.

Brünger, A.T. and Karplus, M. (1991). ``Molecular Dynamics Simulations with Experimental Restraints", Accounts Chemical Research 24 , 54--61.

Brünger, A.T. and Karplus, M. (1988). ``Polar hydrogen positions in proteins: Empirical energy function placement and neutron diffraction comparison", Proteins 4,148--156.

Brünger, A.T., Karplus, M., and Petsko, G.A. (1989). ``Crystallographic Refinement by Simulated Annealing: Application to a 1.5 Å\ Resolution Structure of Crambin", Acta Cryst. A45, 50--61.

Brünger, A. T., Krukowski, A., and Erickson, J. (1990). ``Slow-Cooling Protocols for Crystallographic Refinement by Simulated Annealing", Acta Cryst. A46, 585--593.

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Brünger, A.T., Leahy, D.J., Hynes, T.R., and Fox, R.O. (1991). ``The 2.9 Å Resolution Structure of an Anti-Dinitrophenyl-Spin-Label Monoclonal Antibody Fab Fragment with Bound Hapten", J. Mol. Biol. 221 , 239--256.

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Clore, G.M. and Gronenborn, A.M. (1989). ``Determination of three-dimensional structures of proteins and nucleic acids in solution by nuclear magnetic resonance spectroscopy", CRC Critical Reviews in Biochemistry 24, 479--564.

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Habazettl, J., Cieslar, C., Oschkinat, H., and Holak, T.A. (1990). ``H-1-NMR Assignments of Side-Chain Conformations in Proteins Using a High-Dimensional Potential in the Simulated Annealing Calculations", FEBS Lett. 268, 141--145.

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Nilsson, L., Clore, G.M., Gronenborn, A.M., Brünger, A.T., and Karplus, M. (1986). ``Structure refinement of oligonucleotides by molecular dynamics with nuclear Overhauser effect interproton distance restraints: Application to 5' d(C-G-T-A-C-G)", J. Mol. Biol. 188, 455--475.

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