How to make surfaces | ribbons | ball-and-stick | electron-density and stick | anisotropic ellipsoids | symmetry mate images.

How to view a protein molecule quickly from a PDB file.

A suggested standard coloring scheme for molecular graphics.

Cambridge Structural Database
Cn3d
Bobscript
DialX
DRAWNA
Explorer
Ghostscript and Ghostview
Grasp
HOLE
IRIS Explorer
ISIS/DRAW
LIGPLOT
MAIN
MidasPlus
Molscript
Molecular Surface Package
Molecular Surface Viewer (MSV)
MOLMOL
NAMOT
NAOMI
Nucplot
O
Ortep-III
PLUTON
Povscript
RasMol
Raster-3D
Rayscript
Rayshade
Ribbons
SPOCK
TurboFrodo
SETOR
Sims
SURFNET
Swiss-PDBViewer
VMD
WHAT IF
Xtalview
XZAM