GRASP HISTORY FILE

!Turn off cross hairs
Menu Cascade Begin
menu :GRASP | Miscellaneous
menu :MISCELLANEOUS | Toggle cross hairs on and off
Menu Cascade End

!set depth cueing
Menu Cascade Begin
menu :GRASP | Set Parameters
menu :Parameter Submenu | Depth Cueing
menu :Depth Shading | Enter New Value
menu :For.. | All
line :0.99
Menu Cascade End

!Read pdb file
Menu Cascade Begin                                                              
menu :GRASP | Read                                                              
menu :Read Submenu | PDB File                                                   
menu :Enter/List | Enter File Name                                              
line :2rns_pro2.pdb                                                            
Menu Cascade End        

!Display pdb file
Menu Cascade Begin
menu :GRASP | Display
menu :Display Action | Show
menu :STRUCTURE | Bonds
menu :Default Settings? | YES!
Menu Cascade End
pause

!Build molecular surface
Menu Cascade Begin                                                              
menu :GRASP | Build                                                             
menu :This Structure.. | Molecular Surface                                      
menu :Which Atoms | All Atoms
Menu Cascade End
pause

Menu Cascade Begin
menu :GRASP | Read
menu :Read Submenu | Radius/Charge File (+Assign)
menu :Charge and Size File List | full.crg
Menu Cascade End

Menu Cascade Begin
menu :GRASP | Calculate
menu :Calculate Submenu | New Potential Map
Menu Cascade End

Menu Cascade Begin
menu :GRASP | Calculate
menu :Calculate Submenu | Pot. via Map at Surfaces/Atoms
menu :Which Atoms | All Atoms
menu :What Surface | All Surfaces
Menu Cascade End
pause

!Reorient the molecule
Menu Cascade Begin
menu :GRASP | Miscellaneous
menu :MISCELLANEOUS | Reset World Rotations
Menu Cascade End

!Read pdb file
Menu Cascade Begin
menu :GRASP | Read
menu :Read Submenu | PDB File
menu :Enter/List | Enter File Name
line :2rns_pro1.pdb
Menu Cascade End

!Display pdb file
Menu Cascade Begin
menu :GRASP | Display
menu :Display Action | Show
menu :STRUCTURE | Bonds
menu :Default Settings? | YES!
line :bc=1
line :bc=2,r=pol,a=sch
line :bc=2,r=crg,a=sch
line :bc=3,r=hyd,a=sch
Menu Cascade End
pause

!Make formal subsets
Menu Cascade Begin
menu :GRASP | Formal Subsets
menu :Formal Subset Operations | Make a Formal Subset
menu :Make Formal Subset From | Atoms
menu :Molecule Subset | Make All Molecules Subsets
menu :New Formal Subset Name= m1 | Use this one
menu :New Formal Subset Name= m2 | Use this one
Menu Cascade End

!Display cpk of peptide
Menu Cascade Begin
menu :GRASP | Display
menu :Display Action | Show
menu :STRUCTURE | Atoms 
menu :Default Settings? | No, Let Me Set Them
menu :Color Atoms by | Atom Type
menu :Atom Drawing Mode | Full Spheres
line :c=0,sub=m1
line :c=b,sub=m2
Menu Cascade End

!Fix dials to world
Menu Cascade Begin
menu :GRASP | Formal Subsets
menu :Formal Subset Operations | Fix Dials to World
Menu Cascade End