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2007.06.07 -- This application has been archived. Local users, see a CSB staff member for help if you need to run this program in the Core.
HOLE is a molecular graphics program for visualization and analysis of the holes through atomic models of ion channels. It was written by Oliver Smart.
The User Manual is available locally on-line.
The HOLE progam was bequeathed to the Sansom group at the University of Oxford, which apparently no longer officially supports it.
Other, more up-to-date programs for channel analysis include Caver and Mole.
To get started, type:
setup hole (or source /srv/local/setup/hole.set)
You will then have the following executables in your path:HOLE requires a command file as input. A typical first command would be:
hole < hole.inp > hole.out
See the manual for syntax to run other programs.
Note: If you publish any results from the use of this program please reference the following:
O.S. Smart, J.M. Goodfellow and B.A. Wallace (1993) The Pore Dimensions of Gramicidin A Biophysical Journal 65:2455-2460.
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Contact: webadmin(at)mail^csb^yale^edu Last Modified: Friday, 18-Jul-2014 09:35:20 EDT by P. Fleming |