! example input file run on Arseniev's gramicidin structure
! note everything preceeded by a "!" is a comment and will be ignored by HOLE
!
! This example run by line:
! hole < example.inp > example.out &
!
! first cards which must be quoted (note that HOLE is case insensitive (except file names)
coord  1grm_single.pdb          ! Co-ordinates in pdb format
radius /srv/local/hole2/rad/simple.rad	! Use simple AMBER vdw radii
				! n.b. can use ~ in hole
cvect  0 1 0                    ! channel runs approx up Y axis
cpoint 0 0 3 		 	! a point in pore
!
! now optional cards
sample 0.25                     ! distance between planes
pltout example.qpt		! output qpt format quanta plot file
sphpdb example.sph              ! pdb format output of hole sphere centre 
				! (for use in sphqpt program)
endrad 5.			! to avoid having enormous ends
molqpt stick.qpt		! qpt file of the molecule 
				! (stick plot in one colour)