(Re-)creating the database (SEQ3D)

• (Re-)Creating the database
• Introduction.
• preparation
  • ascdata
  • bindata
  • predata
• summary of SEQ3D options
• The PRP options
  • Description of (PRP001)
  • Description of (PRP002)
  • Description of (PRP003)
  • Description of (PRP004)
  • Description of (PRP005)
  • Description of (PRP006)
  • Description of (PRP007)
  • Description of (PRP008)
  • Description of (PRP009)
  • Description of (PRP010)
  • Description of (PRP011)
  • Description of (PRP012)
  • Description of (PRP013)
  • Description of (PRP014)
  • Description of (PRP015)
  • Description of (PRP016)
  • Description of (PRP017)
  • Description of (PRP018)
  • Description of (PRP019)
  • Description of (PRP020)
  • Description of (PRP021)
• The auxiliary options to create auxiliary files....
  • Description of (AUX001)
  • Description of (AUX002)
  • Description of (AUX003)
  • Description of (AUX004)
  • Description of (AUX005)
  • Description of (AUX006)
  • Description of (AUX007)
  • Description of (AUX008)
  • Description of (AUX009)
  • Description of (AUX010)
  • Description of (AUX011)
• Hidden options
  • Check if all files exist (PRPCHK)
  • Create formatted coordinate file (MAKFMT)
  • Regenerate coordinate file (MAKXYZ)
  • Copy all PDB files to default directory (PRP101)
  • regenerate PDB.LIST from the database (PRP102)
  • checks if all HSSP files exist (PRP103)
  • creates formatted HSSP derived files (PRP107)
  • re-creates real HSSP derived files (PRP108)
  • Creates the 1-3 bond table (PRP110)
  • Creates the 1-2-3 angle table for the soup (PRP115)