ESSENTIAL DYNAMICS ANALYSIS (ESSDYN)

• Introduction.
• Selection of (protein) atoms (WEDSEL)
• Presentation of results (PRNSEL)
• Fitting selected atoms of trajectory to a reference frame (WEDTRA)
• Building up a covariance matrix and diagonalizing it (WEDEIG)
• Make projections of trajectory on eigenvectors etc (WEDPRJ)
• Perform all essential dynamics analysis (WEDALL)
• Analyze WEDTRA output (ANWTRA)
• Analyze WEDEIG output (ANWEIG)
• Analyze WEDPRF output (ANWPRJ)
• Use a reference frame for WEDTRA (SELMAS)