User's Guide

| Dept. of Genetics | WashU | Medical School | Sequencing Center | CGM | IBC|
| Eddy lab | Internal (lab only) | HMMER | PFAM | tRNAscan-SE | Software | Publications |

next up previous contents
Next: Contents

HMMER User's Guide
Biological sequence analysis using profile hidden Markov models

Version 2.1.1; December 1998

Sean Eddy
Dept. of Genetics, Washington University School of Medicine
4566 Scott Ave., St. Louis, MO 63110, USA
With contributions by Ewan Birney (birney@sanger.ac.uk)

Copyright (C) 1992-1998, Washington University in St. Louis.

Permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and this permission notice are retained on all copies.

The HMMER software package is a copyrighted work that may be freely distributed and modified under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. Some versions of HMMER may have been obtained under specialized commercial licenses from Washington University; for details, see the files COPYING and LICENSE that came with your copy of the HMMER software.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

See the Appendix for a copy of the full text of the GNU General Public License.

next up previous contents
Next: Contents

Direct comments and questions to <eddy@genetics.wustl.edu>