[WashU] HMMER
User's Guide


| Dept. of Genetics | WashU | Medical School | Sequencing Center | CGM | IBC|
| Eddy lab | Internal (lab only) | HMMER | PFAM | tRNAscan-SE | Software | Publications |

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Next: Other profile HMM implementations Up: Introduction Previous: Command line options

Environment variables

HMMER is built to coexist peacefully with the BLAST suite of database search programs [Altschul, 1991]. HMMER reads the following environment variables (the examples given use UNIX csh syntax):


next up previous contents
Next: Other profile HMM implementations Up: Introduction Previous: Command line options


Direct comments and questions to <eddy@genetics.wustl.edu>