[WashU] HMMER
User's Guide


| Dept. of Genetics | WashU | Medical School | Sequencing Center | CGM | IBC|
| Eddy lab | Internal (lab only) | HMMER | PFAM | tRNAscan-SE | Software | Publications |

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Subsections

hmmindex - create a binary GSI index for an HMM database

Synopsis

hmmindex [options] database

Description

hmmindex is a utility that creates a binary GSI ("generic sequence index" format) index for an HMM database file called database. The new index file is named database.gsi. A GSI index file is required for hmmfetch to work, and also for the PVM implementation of hmmpfam.

Options


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Next: hmmpfam - search a Up: Manual pages Previous: hmmfetch - retrieve an


Direct comments and questions to <eddy@genetics.wustl.edu>