[WashU] HMMER
User's Guide


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Subsections

seqstat - show statistics and format for a sequence file

Synopsis

seqstat [options] seqfile

Description

seqstat reads a sequence file seqfile in any supported format, and shows a number of simple statistics about it. Supported formats include (but are not limited to) the unaligned formats FASTA, Genbank, EMBL, SWISS-PROT, PIR, and GCG, and the aligned formats SELEX, Clustal, and GCG MSF. The printed statistics include the name of the format, the residue type of the first sequence (protein, RNA, or DNA), the number of sequences, the total number of residues, and the average and range of the sequence lengths.

Options


next up previous contents
Next: sreformat - convert sequence Up: Manual pages Previous: getseq - get a


Direct comments and questions to <eddy@genetics.wustl.edu>