[WashU] HMMER
User's Guide


| Dept. of Genetics | WashU | Medical School | Sequencing Center | CGM | IBC|
| Eddy lab | Internal (lab only) | HMMER | PFAM | tRNAscan-SE | Software | Publications |

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Make targets

There are a variety of make targets in the toplevel Makefile. For completeness, they are summarized here. You shouldn't need to know this stuff. Targets marked (Private) are targets which are not supported in the public HMMER release. They only run in my local development environment.

all
Compiles the source code; puts the compiled programs in the binaries/ subdirectory.
check
Compiles and runs the testsuite.

install
Installs the programs in BINDIR and the man pages in MANDIR.

clean
Cleans up the directory, leaving the distribution files.

verify
Runs consistency checks on the package. (Private)

doc
Builds the Userguide from ource. (Private)

dist
Checks out a complete distribution from RCS and assembles the .tar.Z file. (Private)

ftpdist
Installs a new release on the FTP site. (Private)

stable
Symlinks a new FTP release to hmmer.tar.Z. (Private)

almostclean
Like 'make clean', but leaves the binaries/ subdirectory. Used for making an executable distribution. (Private)


next up previous contents
Next: License terms Up: Installation Previous: Recommended systems


Direct comments and questions to <eddy@genetics.wustl.edu>